The magnetic material used in the speaker has no effect on sound, in my opinion. What does make a difference is how the designer chooses to use his materials. Neodymium is powerful and lightweight (but potentially much more expensive due to the areas in which the metal is mined and political volatility), but if a designer follows the same parameters he or she would follow using other magnets the sound should be the same. Neo speakers got a bad name early on due to the designers using overkill just because it could be done.
As noted above, there are no issues (or sonic signature that I can identify) with the Jazzmaster Ultralight neo cabinet, and I have changed over to neo cabs for my bass amps due to the much lighter weight of a properly designed neo speaker. I can detect no dramatic difference between my 65 lb Mesa/Boogie 1x15 (with a 10" passive radiator) and a pair of 16 lb 1x10 Genz-Benz neo boxes. Certainly not enough to justify the added difficulty of moving the extra weight! Two tens sound different from the fifteen + radiator, which is what you would expect whatever the magnets used; but I can get very nearly the same sonic results using the EQ on the M/B head.
In my opinion, lightweight speakers are the wave of the future, especially with bass cabinets. To be sure, there will always be guys who will want the enormous stack, just as there are guys who buy a Dodge Hemi to cruise Main St with. Me, I'm 69 years old, and I don't need to impress anyone but my doctor.
Forty-five lbs, 300 watts.